Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05432.1 | EFC05433.1 | HMPREF9013_0369 | HMPREF9013_0370 | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Hypothetical protein. | 0.495 |
| EFC05432.1 | EFC05435.1 | HMPREF9013_0369 | HMPREF9013_0372 | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.539 |
| EFC05432.1 | EFC05436.1 | HMPREF9013_0369 | HMPREF9013_0373 | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Putative L-serine ammonia-lyase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03313. | 0.539 |
| EFC05432.1 | EFC05437.1 | HMPREF9013_0369 | HMPREF9013_0374 | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Peptidase, U32 family; Identified by match to protein family HMM PF01136. | 0.517 |
| EFC05432.1 | holA | HMPREF9013_0369 | HMPREF9013_0371 | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.597 |
| EFC05432.1 | mscL | HMPREF9013_0369 | HMPREF9013_0375 | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.499 |
| EFC05433.1 | EFC05432.1 | HMPREF9013_0370 | HMPREF9013_0369 | Hypothetical protein. | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | 0.495 |
| EFC05433.1 | EFC05435.1 | HMPREF9013_0370 | HMPREF9013_0372 | Hypothetical protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.773 |
| EFC05433.1 | EFC05436.1 | HMPREF9013_0370 | HMPREF9013_0373 | Hypothetical protein. | Putative L-serine ammonia-lyase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03313. | 0.773 |
| EFC05433.1 | EFC05437.1 | HMPREF9013_0370 | HMPREF9013_0374 | Hypothetical protein. | Peptidase, U32 family; Identified by match to protein family HMM PF01136. | 0.773 |
| EFC05433.1 | holA | HMPREF9013_0370 | HMPREF9013_0371 | Hypothetical protein. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.773 |
| EFC05433.1 | mscL | HMPREF9013_0370 | HMPREF9013_0375 | Hypothetical protein. | Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.773 |
| EFC05435.1 | EFC05432.1 | HMPREF9013_0372 | HMPREF9013_0369 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | 0.539 |
| EFC05435.1 | EFC05433.1 | HMPREF9013_0372 | HMPREF9013_0370 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein. | 0.773 |
| EFC05435.1 | EFC05436.1 | HMPREF9013_0372 | HMPREF9013_0373 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative L-serine ammonia-lyase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03313. | 0.994 |
| EFC05435.1 | EFC05437.1 | HMPREF9013_0372 | HMPREF9013_0374 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Peptidase, U32 family; Identified by match to protein family HMM PF01136. | 0.775 |
| EFC05435.1 | EFC05649.1 | HMPREF9013_0372 | HMPREF9013_0254 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Aminotransferase, class V; Identified by match to protein family HMM PF00266. | 0.539 |
| EFC05435.1 | EFC05662.1 | HMPREF9013_0372 | HMPREF9013_0267 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. | 0.598 |
| EFC05435.1 | cysS | HMPREF9013_0372 | HMPREF9013_1168 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.510 |
| EFC05435.1 | holA | HMPREF9013_0372 | HMPREF9013_0371 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.793 |
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