Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05157.1 | EFC05158.1 | HMPREF9013_0437 | HMPREF9013_0438 | Hypothetical protein. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.955 |
| EFC05158.1 | EFC05157.1 | HMPREF9013_0438 | HMPREF9013_0437 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Hypothetical protein. | 0.955 |
| EFC05158.1 | EFC05930.1 | HMPREF9013_0438 | HMPREF9013_0132 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | 0.670 |
| EFC05158.1 | EFC06028.1 | HMPREF9013_0438 | HMPREF9013_0231 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.729 |
| EFC05158.1 | EFC06113.1 | HMPREF9013_0438 | HMPREF9013_0808 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.809 |
| EFC05158.1 | atpA | HMPREF9013_0438 | HMPREF9013_1133 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.744 |
| EFC05158.1 | atpB | HMPREF9013_0438 | HMPREF9013_1129 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.593 |
| EFC05158.1 | atpC | HMPREF9013_0438 | HMPREF9013_1136 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.715 |
| EFC05158.1 | atpD | HMPREF9013_0438 | HMPREF9013_1135 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.752 |
| EFC05158.1 | atpG | HMPREF9013_0438 | HMPREF9013_1134 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.734 |
| EFC05158.1 | atpH | HMPREF9013_0438 | HMPREF9013_1132 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.600 |
| EFC05930.1 | EFC05158.1 | HMPREF9013_0132 | HMPREF9013_0438 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.670 |
| EFC06028.1 | EFC05158.1 | HMPREF9013_0231 | HMPREF9013_0438 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.729 |
| EFC06113.1 | EFC05158.1 | HMPREF9013_0808 | HMPREF9013_0438 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.809 |
| atpA | EFC05158.1 | HMPREF9013_1133 | HMPREF9013_0438 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.744 |
| atpA | atpB | HMPREF9013_1133 | HMPREF9013_1129 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.999 |
| atpA | atpC | HMPREF9013_1133 | HMPREF9013_1136 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.999 |
| atpA | atpD | HMPREF9013_1133 | HMPREF9013_1135 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.999 |
| atpA | atpG | HMPREF9013_1133 | HMPREF9013_1134 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpA | atpH | HMPREF9013_1133 | HMPREF9013_1132 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
page 1 of 3