STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05184.1Hypothetical protein. (76 aa)    
Predicted Functional Partners:
EFC05186.1
AMP-binding enzyme; Identified by match to protein family HMM PF00501; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.999
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
 0.999
EFC05187.1
Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
 
 
 0.998
EFC06272.1
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF07992.
  
 0.997
EFC05183.1
Phosphopantetheine--protein transferase domain protein; Identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556; Belongs to the P-Pant transferase superfamily.
 
 
 0.989
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.985
rplQ
Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.
   
   0.970
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.969
EFC05185.1
Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784.
 
  
 0.965
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
 0.959
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.