STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05185.1Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. (369 aa)    
Predicted Functional Partners:
EFC05184.1
Hypothetical protein.
 
  
 0.965
EFC05186.1
AMP-binding enzyme; Identified by match to protein family HMM PF00501; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.947
EFC05188.1
Hypothetical protein; Identified by glimmer; putative.
 
   
 0.931
EFC05904.1
Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595.
    
  0.916
EFC05187.1
Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
 
     0.863
EFC06098.1
Hypothetical protein; Identified by glimmer; putative.
  
 0.774
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.769
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.730
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245.
    
 0.727
EFC06261.1
Aminotransferase, class I/II; Identified by match to protein family HMM PF00155.
  
 
 0.699
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.