STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05198.1Hypothetical protein; Identified by glimmer; putative. (317 aa)    
Predicted Functional Partners:
EFC05199.1
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
  
 
 0.994
EFC05197.1
Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.972
EFC05432.1
comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.
  
  
 0.635
EFC05200.1
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
       0.632
EFC05362.1
Helicase C-terminal domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00271.
   
  
 0.632
rpmG
Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family.
       0.545
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
  
  
 0.474
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.460
EFC05850.1
Identified by match to protein family HMM PF00436; match to protein family HMM PF01336.
  
    0.447
EFC05366.1
Peptidase, A24 family; Identified by match to protein family HMM PF01478.
  
  
 0.447
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.