EFC05219.1 protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05217.1	EFC05218.1	HMPREF9013_0500	HMPREF9013_0501	Hypothetical protein.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.773
EFC05217.1	EFC05219.1	HMPREF9013_0500	HMPREF9013_0502	Hypothetical protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.773
EFC05217.1	rpsO	HMPREF9013_0500	HMPREF9013_0503	Hypothetical protein.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.515
EFC05218.1	EFC05217.1	HMPREF9013_0501	HMPREF9013_0500	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Hypothetical protein.	0.773
EFC05218.1	EFC05219.1	HMPREF9013_0501	HMPREF9013_0502	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.987
EFC05218.1	EFC05669.1	HMPREF9013_0501	HMPREF9013_0274	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.	0.894
EFC05218.1	EFC06292.1	HMPREF9013_0501	HMPREF9013_0999	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.792
EFC05218.1	EFC06294.1	HMPREF9013_0501	HMPREF9013_1001	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Hypothetical protein.	0.604
EFC05218.1	rpsO	HMPREF9013_0501	HMPREF9013_0503	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.560
EFC05219.1	EFC05217.1	HMPREF9013_0502	HMPREF9013_0500	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Hypothetical protein.	0.773
EFC05219.1	EFC05218.1	HMPREF9013_0502	HMPREF9013_0501	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.987
EFC05219.1	EFC05669.1	HMPREF9013_0502	HMPREF9013_0274	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.	0.738
EFC05219.1	EFC05931.1	HMPREF9013_0502	HMPREF9013_0133	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.518
EFC05219.1	EFC06135.1	HMPREF9013_0502	HMPREF9013_0830	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.698
EFC05219.1	EFC06137.1	HMPREF9013_0502	HMPREF9013_0832	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.698
EFC05219.1	EFC06292.1	HMPREF9013_0502	HMPREF9013_0999	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.505
EFC05219.1	EFC06294.1	HMPREF9013_0502	HMPREF9013_1001	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Hypothetical protein.	0.848
EFC05219.1	EFC06325.1	HMPREF9013_0502	HMPREF9013_1032	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.946
EFC05219.1	rpsO	HMPREF9013_0502	HMPREF9013_0503	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.515
EFC05669.1	EFC05218.1	HMPREF9013_0274	HMPREF9013_0501	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.894