STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05219.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (244 aa)    
Predicted Functional Partners:
EFC05218.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 0.993
EFC06325.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.934
EFC06294.1
Hypothetical protein.
  
 0.913
EFC05669.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
 
0.874
EFC06135.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 0.847
EFC06137.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 0.847
EFC05217.1
Hypothetical protein.
       0.773
EFC05931.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
0.549
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.515
EFC05158.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
0.478
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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