Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05282.1 | EFC05286.1 | HMPREF9013_0566 | HMPREF9013_0570 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | Hypothetical protein; Identified by glimmer; putative. | 0.770 |
| EFC05282.1 | EFC05287.1 | HMPREF9013_0566 | HMPREF9013_0571 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.768 |
| EFC05282.1 | EFC05648.1 | HMPREF9013_0566 | HMPREF9013_0253 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | O-antigen polymerase; Identified by match to protein family HMM PF04932. | 0.770 |
| EFC05282.1 | EFC05757.1 | HMPREF9013_0566 | HMPREF9013_0681 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | Hypothetical protein. | 0.842 |
| EFC05282.1 | EFC05994.1 | HMPREF9013_0566 | HMPREF9013_0197 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | 0.929 |
| EFC05282.1 | atpA-2 | HMPREF9013_0566 | HMPREF9013_0569 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. | 0.768 |
| EFC05282.1 | atpB-2 | HMPREF9013_0566 | HMPREF9013_0568 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit. | 0.777 |
| EFC05282.1 | atpD-2 | HMPREF9013_0566 | HMPREF9013_0567 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.773 |
| EFC05282.1 | glgB | HMPREF9013_0566 | HMPREF9013_0192 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | 0.959 |
| EFC05282.1 | recX | HMPREF9013_0566 | HMPREF9013_0562 | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.949 |
| EFC05286.1 | EFC05282.1 | HMPREF9013_0570 | HMPREF9013_0566 | Hypothetical protein; Identified by glimmer; putative. | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | 0.770 |
| EFC05286.1 | EFC05287.1 | HMPREF9013_0570 | HMPREF9013_0571 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.773 |
| EFC05286.1 | atpA-2 | HMPREF9013_0570 | HMPREF9013_0569 | Hypothetical protein; Identified by glimmer; putative. | ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. | 0.999 |
| EFC05286.1 | atpB-2 | HMPREF9013_0570 | HMPREF9013_0568 | Hypothetical protein; Identified by glimmer; putative. | ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit. | 0.999 |
| EFC05286.1 | atpD-2 | HMPREF9013_0570 | HMPREF9013_0567 | Hypothetical protein; Identified by glimmer; putative. | V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.999 |
| EFC05287.1 | EFC05282.1 | HMPREF9013_0571 | HMPREF9013_0566 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. | 0.768 |
| EFC05287.1 | EFC05286.1 | HMPREF9013_0571 | HMPREF9013_0570 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| EFC05287.1 | atpA-2 | HMPREF9013_0571 | HMPREF9013_0569 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. | 0.773 |
| EFC05287.1 | atpB-2 | HMPREF9013_0571 | HMPREF9013_0568 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ATP synthase ab domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit. | 0.768 |
| EFC05287.1 | atpD-2 | HMPREF9013_0571 | HMPREF9013_0567 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.768 |
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