STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05317.1Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561. (291 aa)    
Predicted Functional Partners:
EFC06272.1
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF07992.
  
 
 0.970
EFC05184.1
Hypothetical protein.
  
 0.956
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
   0.949
EFC05996.1
Identified by match to protein family HMM PF03009.
 
  
 0.946
EFC05848.1
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
    
 
 0.700
EFC06228.1
Ankyrin repeat protein; Identified by match to protein family HMM PF00023; overlaps another CDS with the same product name.
    
 
 0.700
EFC06229.1
Ankyrin repeat protein; Identified by match to protein family HMM PF00023; overlaps another CDS with the same product name.
    
 
 0.700
EFC05186.1
AMP-binding enzyme; Identified by match to protein family HMM PF00501; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.669
EFC05961.1
Phospholipase, patatin family; Identified by match to protein family HMM PF01734.
  
 
 0.639
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
   0.622
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.