Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05358.1 | EFC05698.1 | HMPREF9013_1383 | HMPREF9013_0612 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; match to protein family HMM PF09297. | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | 0.762 |
| EFC05696.1 | EFC05697.1 | HMPREF9013_0610 | HMPREF9013_0611 | Hypothetical protein; Identified by glimmer; putative. | ROK family protein; Identified by match to protein family HMM PF00480; match to protein family HMM PF01869. | 0.775 |
| EFC05696.1 | EFC05698.1 | HMPREF9013_0610 | HMPREF9013_0612 | Hypothetical protein; Identified by glimmer; putative. | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | 0.610 |
| EFC05696.1 | raiA | HMPREF9013_0610 | HMPREF9013_0609 | Hypothetical protein; Identified by glimmer; putative. | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.608 |
| EFC05697.1 | EFC05696.1 | HMPREF9013_0611 | HMPREF9013_0610 | ROK family protein; Identified by match to protein family HMM PF00480; match to protein family HMM PF01869. | Hypothetical protein; Identified by glimmer; putative. | 0.775 |
| EFC05697.1 | EFC05698.1 | HMPREF9013_0611 | HMPREF9013_0612 | ROK family protein; Identified by match to protein family HMM PF00480; match to protein family HMM PF01869. | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | 0.610 |
| EFC05697.1 | raiA | HMPREF9013_0611 | HMPREF9013_0609 | ROK family protein; Identified by match to protein family HMM PF00480; match to protein family HMM PF01869. | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.619 |
| EFC05698.1 | EFC05358.1 | HMPREF9013_0612 | HMPREF9013_1383 | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; match to protein family HMM PF09297. | 0.762 |
| EFC05698.1 | EFC05696.1 | HMPREF9013_0612 | HMPREF9013_0610 | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | Hypothetical protein; Identified by glimmer; putative. | 0.610 |
| EFC05698.1 | EFC05697.1 | HMPREF9013_0612 | HMPREF9013_0611 | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | ROK family protein; Identified by match to protein family HMM PF00480; match to protein family HMM PF01869. | 0.610 |
| EFC05698.1 | EFC05699.1 | HMPREF9013_0612 | HMPREF9013_0613 | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | Hypothetical protein; Identified by glimmer; putative. | 0.422 |
| EFC05698.1 | metG | HMPREF9013_0612 | HMPREF9013_1148 | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.426 |
| EFC05698.1 | raiA | HMPREF9013_0612 | HMPREF9013_0609 | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.485 |
| EFC05699.1 | EFC05698.1 | HMPREF9013_0613 | HMPREF9013_0612 | Hypothetical protein; Identified by glimmer; putative. | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | 0.422 |
| metG | EFC05698.1 | HMPREF9013_1148 | HMPREF9013_0612 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | 0.426 |
| raiA | EFC05696.1 | HMPREF9013_0609 | HMPREF9013_0610 | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Hypothetical protein; Identified by glimmer; putative. | 0.608 |
| raiA | EFC05697.1 | HMPREF9013_0609 | HMPREF9013_0611 | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | ROK family protein; Identified by match to protein family HMM PF00480; match to protein family HMM PF01869. | 0.619 |
| raiA | EFC05698.1 | HMPREF9013_0609 | HMPREF9013_0612 | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family. | 0.485 |