STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05716.1ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547. (363 aa)    
Predicted Functional Partners:
EFC05717.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.999
EFC05718.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.999
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.999
EFC05720.1
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
     
 0.831
EFC05733.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
   
 0.667
EFC05715.1
HD domain protein; Identified by match to protein family HMM PF01966.
       0.655
EFC05737.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
    
 0.592
EFC05736.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
    
  0.553
EFC05615.1
Hypothetical protein.
    
 0.536
EFC06457.1
RecF/RecN/SMC N-terminal domain protein; Identified by match to protein family HMM PF02463.
    
 0.536
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.