Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05758.1 | EFC05759.1 | HMPREF9013_0682 | HMPREF9013_0683 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.946 |
| EFC05758.1 | EFC05760.1 | HMPREF9013_0682 | HMPREF9013_0684 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | 0.780 |
| EFC05758.1 | EFC05761.1 | HMPREF9013_0682 | HMPREF9013_0685 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | 0.780 |
| EFC05758.1 | EFC05762.1 | HMPREF9013_0682 | HMPREF9013_0686 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | Hypothetical protein. | 0.557 |
| EFC05758.1 | EFC05763.1 | HMPREF9013_0682 | HMPREF9013_0687 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | 0.435 |
| EFC05758.1 | EFC05764.1 | HMPREF9013_0682 | HMPREF9013_0688 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.435 |
| EFC05758.1 | EFC05765.1 | HMPREF9013_0682 | HMPREF9013_0690 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | Hypothetical protein. | 0.441 |
| EFC05759.1 | EFC05758.1 | HMPREF9013_0683 | HMPREF9013_0682 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | 0.946 |
| EFC05759.1 | EFC05760.1 | HMPREF9013_0683 | HMPREF9013_0684 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | 0.776 |
| EFC05759.1 | EFC05761.1 | HMPREF9013_0683 | HMPREF9013_0685 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | 0.776 |
| EFC05759.1 | EFC05762.1 | HMPREF9013_0683 | HMPREF9013_0686 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein. | 0.560 |
| EFC05759.1 | EFC05763.1 | HMPREF9013_0683 | HMPREF9013_0687 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | 0.435 |
| EFC05759.1 | EFC05764.1 | HMPREF9013_0683 | HMPREF9013_0688 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.435 |
| EFC05759.1 | EFC05765.1 | HMPREF9013_0683 | HMPREF9013_0690 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein. | 0.441 |
| EFC05760.1 | EFC05758.1 | HMPREF9013_0684 | HMPREF9013_0682 | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; overlaps another CDS with the same product name. | 0.780 |
| EFC05760.1 | EFC05759.1 | HMPREF9013_0684 | HMPREF9013_0683 | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; overlaps another CDS with the same product name; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.776 |
| EFC05760.1 | EFC05761.1 | HMPREF9013_0684 | HMPREF9013_0685 | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | 0.956 |
| EFC05760.1 | EFC05762.1 | HMPREF9013_0684 | HMPREF9013_0686 | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | Hypothetical protein. | 0.546 |
| EFC05760.1 | EFC05763.1 | HMPREF9013_0684 | HMPREF9013_0687 | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | 0.435 |
| EFC05760.1 | EFC05764.1 | HMPREF9013_0684 | HMPREF9013_0688 | Peptidase, U32 family; Identified by match to protein family HMM PF01136; overlaps another CDS with the same product name. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.435 |
page 1 of 3