Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05450.1 | EFC05780.1 | HMPREF9013_0387 | HMPREF9013_0704 | Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832. | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | 0.799 |
| EFC05450.1 | EFC06017.1 | HMPREF9013_0387 | HMPREF9013_0220 | Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832. | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | 0.803 |
| EFC05489.1 | EFC05780.1 | HMPREF9013_1192 | HMPREF9013_0704 | PRD domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05043. | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | 0.409 |
| EFC05489.1 | EFC06017.1 | HMPREF9013_1192 | HMPREF9013_0220 | PRD domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05043. | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | 0.712 |
| EFC05536.1 | EFC05780.1 | HMPREF9013_1239 | HMPREF9013_0704 | Cobalt transport protein; Identified by match to protein family HMM PF02361. | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | 0.466 |
| EFC05536.1 | EFC06017.1 | HMPREF9013_1239 | HMPREF9013_0220 | Cobalt transport protein; Identified by match to protein family HMM PF02361. | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | 0.437 |
| EFC05640.1 | EFC05780.1 | HMPREF9013_0245 | HMPREF9013_0704 | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative. | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | 0.791 |
| EFC05780.1 | EFC05450.1 | HMPREF9013_0704 | HMPREF9013_0387 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832. | 0.799 |
| EFC05780.1 | EFC05489.1 | HMPREF9013_0704 | HMPREF9013_1192 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | PRD domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05043. | 0.409 |
| EFC05780.1 | EFC05536.1 | HMPREF9013_0704 | HMPREF9013_1239 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | Cobalt transport protein; Identified by match to protein family HMM PF02361. | 0.466 |
| EFC05780.1 | EFC05640.1 | HMPREF9013_0704 | HMPREF9013_0245 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative. | 0.791 |
| EFC05780.1 | EFC05881.1 | HMPREF9013_0704 | HMPREF9013_0076 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.445 |
| EFC05780.1 | EFC05930.1 | HMPREF9013_0704 | HMPREF9013_0132 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | 0.514 |
| EFC05780.1 | EFC05951.1 | HMPREF9013_0704 | HMPREF9013_0153 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | Hypothetical protein. | 0.443 |
| EFC05780.1 | EFC06017.1 | HMPREF9013_0704 | HMPREF9013_0220 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | 0.514 |
| EFC05780.1 | EFC06367.1 | HMPREF9013_0704 | HMPREF9013_1075 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | 0.453 |
| EFC05780.1 | EFC06468.1 | HMPREF9013_0704 | HMPREF9013_1413 | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | Identified by match to protein family HMM PF00881. | 0.443 |
| EFC05881.1 | EFC05780.1 | HMPREF9013_0076 | HMPREF9013_0704 | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | 0.445 |
| EFC05930.1 | EFC05780.1 | HMPREF9013_0132 | HMPREF9013_0704 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. | 0.514 |
| EFC05930.1 | EFC05951.1 | HMPREF9013_0132 | HMPREF9013_0153 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | Hypothetical protein. | 0.783 |
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