Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFC05784.1 | EFC05785.1 | HMPREF9013_0709 | HMPREF9013_0710 | Primosomal protein DnaI. | Hypothetical protein; Identified by glimmer; putative. | 0.855 |
EFC05784.1 | EFC05789.1 | HMPREF9013_0709 | HMPREF9013_0714 | Primosomal protein DnaI. | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297. | 0.787 |
EFC05784.1 | EFC05790.1 | HMPREF9013_0709 | HMPREF9013_0715 | Primosomal protein DnaI. | Identified by match to protein family HMM PF01594. | 0.775 |
EFC05784.1 | EFC05791.1 | HMPREF9013_0709 | HMPREF9013_0716 | Primosomal protein DnaI. | Putative DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family. | 0.736 |
EFC05784.1 | coaE | HMPREF9013_0709 | HMPREF9013_0711 | Primosomal protein DnaI. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.824 |
EFC05784.1 | mutM | HMPREF9013_0709 | HMPREF9013_0712 | Primosomal protein DnaI. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.840 |
EFC05784.1 | pepI | HMPREF9013_0709 | HMPREF9013_0717 | Primosomal protein DnaI. | Prolyl aminopeptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family. | 0.584 |
EFC05784.1 | pfkA | HMPREF9013_0709 | HMPREF9013_0708 | Primosomal protein DnaI. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.714 |
EFC05784.1 | polA | HMPREF9013_0709 | HMPREF9013_0713 | Primosomal protein DnaI. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.896 |
EFC05784.1 | pyk | HMPREF9013_0709 | HMPREF9013_0707 | Primosomal protein DnaI. | Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family. | 0.690 |
EFC05785.1 | EFC05784.1 | HMPREF9013_0710 | HMPREF9013_0709 | Hypothetical protein; Identified by glimmer; putative. | Primosomal protein DnaI. | 0.855 |
EFC05785.1 | EFC05789.1 | HMPREF9013_0710 | HMPREF9013_0714 | Hypothetical protein; Identified by glimmer; putative. | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297. | 0.786 |
EFC05785.1 | EFC05790.1 | HMPREF9013_0710 | HMPREF9013_0715 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF01594. | 0.775 |
EFC05785.1 | EFC05791.1 | HMPREF9013_0710 | HMPREF9013_0716 | Hypothetical protein; Identified by glimmer; putative. | Putative DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family. | 0.727 |
EFC05785.1 | coaE | HMPREF9013_0710 | HMPREF9013_0711 | Hypothetical protein; Identified by glimmer; putative. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.826 |
EFC05785.1 | mutM | HMPREF9013_0710 | HMPREF9013_0712 | Hypothetical protein; Identified by glimmer; putative. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.863 |
EFC05785.1 | pepI | HMPREF9013_0710 | HMPREF9013_0717 | Hypothetical protein; Identified by glimmer; putative. | Prolyl aminopeptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family. | 0.584 |
EFC05785.1 | pfkA | HMPREF9013_0710 | HMPREF9013_0708 | Hypothetical protein; Identified by glimmer; putative. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.714 |
EFC05785.1 | polA | HMPREF9013_0710 | HMPREF9013_0713 | Hypothetical protein; Identified by glimmer; putative. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.861 |
EFC05785.1 | pyk | HMPREF9013_0710 | HMPREF9013_0707 | Hypothetical protein; Identified by glimmer; putative. | Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family. | 0.690 |
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