STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05793.1PTS system fructose IIA component; Identified by match to protein family HMM PF03610. (136 aa)    
Predicted Functional Partners:
EFC06298.1
PTS system sorbose-specific iic component; Identified by match to protein family HMM PF03609.
 
 0.930
EFC06297.1
PTS system mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.
 
 0.924
EFC05266.1
PTS system mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.
 
 0.918
EFC05267.1
PTS system sorbose-specific iic component; Identified by match to protein family HMM PF03609.
 
 0.917
ptsH
Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
 0.890
EFC05268.1
PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03830.
 
 
 0.870
EFC06299.1
PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03830; match to protein family HMM TIGR00854.
 
 
 0.861
rseP
RIP metalloprotease RseP; Identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054.
       0.773
pepI
Prolyl aminopeptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
  
    0.704
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
      
 0.618
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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