STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05799.1Tail tape measure protein, TP901 family; Identified by glimmer; putative. (125 aa)    
Predicted Functional Partners:
EFC05587.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.904
EFC05801.1
Hypothetical protein.
 
     0.872
EFC05802.1
Major tail protein, Phi13 family.
 
     0.872
EFC05798.1
Identified by match to protein family HMM PF06250.
       0.773
EFC05188.1
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.762
EFC05583.1
Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
 
    0.761
EFC06017.1
Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein.
   
   0.635
EFC06111.1
Hypothetical protein.
   
   0.635
EFC05630.1
Listeria/Bacterioides repeat protein.
   
   0.635
EFC05584.1
Glycosyl hydrolase family 25; Identified by match to protein family HMM PF01183; match to protein family HMM PF08230.
 
     0.595
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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