Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05199.1 | EFC05306.1 | HMPREF9013_0481 | HMPREF9013_0591 | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | 0.419 |
| EFC05199.1 | EFC05361.1 | HMPREF9013_0481 | HMPREF9013_1386 | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | Hypothetical protein; Identified by glimmer; putative. | 0.516 |
| EFC05199.1 | dprA | HMPREF9013_0481 | HMPREF9013_0742 | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | 0.630 |
| EFC05306.1 | EFC05199.1 | HMPREF9013_0591 | HMPREF9013_0481 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | 0.419 |
| EFC05306.1 | dprA | HMPREF9013_0591 | HMPREF9013_0742 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | 0.652 |
| EFC05306.1 | recA | HMPREF9013_0591 | HMPREF9013_0768 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.548 |
| EFC05306.1 | rnhB | HMPREF9013_0591 | HMPREF9013_0743 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.490 |
| EFC05306.1 | topA | HMPREF9013_0591 | HMPREF9013_0741 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.805 |
| EFC05306.1 | xerC | HMPREF9013_0591 | HMPREF9013_0739 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Phage integrase SAM-like domain protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.464 |
| EFC05361.1 | EFC05199.1 | HMPREF9013_1386 | HMPREF9013_0481 | Hypothetical protein; Identified by glimmer; putative. | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | 0.516 |
| EFC05361.1 | dprA | HMPREF9013_1386 | HMPREF9013_0742 | Hypothetical protein; Identified by glimmer; putative. | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | 0.717 |
| EFC05361.1 | recA | HMPREF9013_1386 | HMPREF9013_0768 | Hypothetical protein; Identified by glimmer; putative. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.480 |
| EFC05361.1 | xerC | HMPREF9013_1386 | HMPREF9013_0739 | Hypothetical protein; Identified by glimmer; putative. | Phage integrase SAM-like domain protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.444 |
| dprA | EFC05199.1 | HMPREF9013_0742 | HMPREF9013_0481 | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | 0.630 |
| dprA | EFC05306.1 | HMPREF9013_0742 | HMPREF9013_0591 | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | 0.652 |
| dprA | EFC05361.1 | HMPREF9013_0742 | HMPREF9013_1386 | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Hypothetical protein; Identified by glimmer; putative. | 0.717 |
| dprA | lepB | HMPREF9013_0742 | HMPREF9013_0745 | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family. | 0.730 |
| dprA | recA | HMPREF9013_0742 | HMPREF9013_0768 | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.753 |
| dprA | rnhB | HMPREF9013_0742 | HMPREF9013_0743 | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.734 |
| dprA | topA | HMPREF9013_0742 | HMPREF9013_0741 | DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.932 |
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