Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05994.1 | EFC06055.1 | HMPREF9013_0197 | HMPREF9013_0747 | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | Hypothetical protein. | 0.417 |
| EFC05994.1 | EFC06056.1 | HMPREF9013_0197 | HMPREF9013_0748 | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | Haloacid dehalogenase-like hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282. | 0.417 |
| EFC05994.1 | EFC06233.1 | HMPREF9013_0197 | HMPREF9013_0935 | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549. | 0.883 |
| EFC05994.1 | EFC06327.1 | HMPREF9013_0197 | HMPREF9013_1034 | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484. | 0.417 |
| EFC05994.1 | EFC06452.1 | HMPREF9013_0197 | HMPREF9013_1397 | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | Identified by match to protein family HMM PF00485. | 0.419 |
| EFC06055.1 | EFC05994.1 | HMPREF9013_0747 | HMPREF9013_0197 | Hypothetical protein. | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | 0.417 |
| EFC06055.1 | EFC06056.1 | HMPREF9013_0747 | HMPREF9013_0748 | Hypothetical protein. | Haloacid dehalogenase-like hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282. | 0.917 |
| EFC06055.1 | EFC06057.1 | HMPREF9013_0747 | HMPREF9013_0749 | Hypothetical protein. | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; Belongs to the ComB family. | 0.746 |
| EFC06055.1 | EFC06058.1 | HMPREF9013_0747 | HMPREF9013_0750 | Hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.533 |
| EFC06055.1 | EFC06233.1 | HMPREF9013_0747 | HMPREF9013_0935 | Hypothetical protein. | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549. | 0.426 |
| EFC06055.1 | EFC06327.1 | HMPREF9013_0747 | HMPREF9013_1034 | Hypothetical protein. | Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484. | 0.683 |
| EFC06055.1 | EFC06452.1 | HMPREF9013_0747 | HMPREF9013_1397 | Hypothetical protein. | Identified by match to protein family HMM PF00485. | 0.755 |
| EFC06055.1 | EFC06468.1 | HMPREF9013_0747 | HMPREF9013_1413 | Hypothetical protein. | Identified by match to protein family HMM PF00881. | 0.486 |
| EFC06055.1 | ribF | HMPREF9013_0747 | HMPREF9013_0326 | Hypothetical protein. | Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family. | 0.427 |
| EFC06055.1 | rplS | HMPREF9013_0747 | HMPREF9013_0746 | Hypothetical protein. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.457 |
| EFC06056.1 | EFC05994.1 | HMPREF9013_0748 | HMPREF9013_0197 | Haloacid dehalogenase-like hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282. | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family. | 0.417 |
| EFC06056.1 | EFC06055.1 | HMPREF9013_0748 | HMPREF9013_0747 | Haloacid dehalogenase-like hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282. | Hypothetical protein. | 0.917 |
| EFC06056.1 | EFC06057.1 | HMPREF9013_0748 | HMPREF9013_0749 | Haloacid dehalogenase-like hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282. | 2-phosphosulfolactate phosphatase; Identified by match to protein family HMM PF04029; Belongs to the ComB family. | 0.773 |
| EFC06056.1 | EFC06058.1 | HMPREF9013_0748 | HMPREF9013_0750 | Haloacid dehalogenase-like hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282. | Hypothetical protein; Identified by glimmer; putative. | 0.550 |
| EFC06056.1 | EFC06327.1 | HMPREF9013_0748 | HMPREF9013_1034 | Haloacid dehalogenase-like hydrolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282. | Cof-like hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484. | 0.531 |
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