Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05920.1 | nth | HMPREF9013_0120 | HMPREF9013_0777 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.776 |
| EFC05920.1 | polA | HMPREF9013_0120 | HMPREF9013_0713 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.528 |
| EFC05920.1 | ung | HMPREF9013_0120 | HMPREF9013_0882 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.433 |
| EFC05920.1 | xth | HMPREF9013_0120 | HMPREF9013_1379 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633. | 0.993 |
| EFC06085.1 | EFC06086.1 | HMPREF9013_0778 | HMPREF9013_0779 | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. | 0.749 |
| EFC06085.1 | EFC06087.1 | HMPREF9013_0778 | HMPREF9013_0780 | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488. | 0.746 |
| EFC06085.1 | EFC06088.1 | HMPREF9013_0778 | HMPREF9013_0781 | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | Putative RNA-binding protein, YhbY family; Identified by match to protein family HMM PF01985. | 0.795 |
| EFC06085.1 | nth | HMPREF9013_0778 | HMPREF9013_0777 | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.817 |
| EFC06085.1 | parC | HMPREF9013_0778 | HMPREF9013_0783 | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily. | 0.746 |
| EFC06086.1 | EFC06085.1 | HMPREF9013_0779 | HMPREF9013_0778 | Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.749 |
| EFC06086.1 | EFC06087.1 | HMPREF9013_0779 | HMPREF9013_0780 | Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. | Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488. | 0.922 |
| EFC06086.1 | EFC06088.1 | HMPREF9013_0779 | HMPREF9013_0781 | Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. | Putative RNA-binding protein, YhbY family; Identified by match to protein family HMM PF01985. | 0.904 |
| EFC06086.1 | nth | HMPREF9013_0779 | HMPREF9013_0777 | Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.774 |
| EFC06086.1 | parC | HMPREF9013_0779 | HMPREF9013_0783 | Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily. | 0.802 |
| EFC06087.1 | EFC06085.1 | HMPREF9013_0780 | HMPREF9013_0778 | Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.746 |
| EFC06087.1 | EFC06086.1 | HMPREF9013_0780 | HMPREF9013_0779 | Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488. | Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. | 0.922 |
| EFC06087.1 | EFC06088.1 | HMPREF9013_0780 | HMPREF9013_0781 | Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488. | Putative RNA-binding protein, YhbY family; Identified by match to protein family HMM PF01985. | 0.871 |
| EFC06087.1 | nth | HMPREF9013_0780 | HMPREF9013_0777 | Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.766 |
| EFC06087.1 | parC | HMPREF9013_0780 | HMPREF9013_0783 | Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488. | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily. | 0.782 |
| EFC06088.1 | EFC06085.1 | HMPREF9013_0781 | HMPREF9013_0778 | Putative RNA-binding protein, YhbY family; Identified by match to protein family HMM PF01985. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.795 |
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