Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05417.1 | EFC05763.1 | HMPREF9013_0353 | HMPREF9013_0687 | Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845. | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | 0.649 |
| EFC05417.1 | EFC06021.1 | HMPREF9013_0353 | HMPREF9013_0224 | Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845. | Putative nicotinate-nucleotide adenylyltransferase; Identified by match to protein family HMM PF01467. | 0.578 |
| EFC05417.1 | aroK | HMPREF9013_0353 | HMPREF9013_0798 | Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.716 |
| EFC05763.1 | EFC05417.1 | HMPREF9013_0687 | HMPREF9013_0353 | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845. | 0.649 |
| EFC05763.1 | aroA | HMPREF9013_0687 | HMPREF9013_0796 | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.725 |
| EFC05763.1 | aroF | HMPREF9013_0687 | HMPREF9013_0797 | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | 3-deoxy-7-phosphoheptulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361. | 0.553 |
| EFC05763.1 | aroK | HMPREF9013_0687 | HMPREF9013_0798 | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.636 |
| EFC06021.1 | EFC05417.1 | HMPREF9013_0224 | HMPREF9013_0353 | Putative nicotinate-nucleotide adenylyltransferase; Identified by match to protein family HMM PF01467. | Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845. | 0.578 |
| EFC06021.1 | EFC06089.1 | HMPREF9013_0224 | HMPREF9013_0782 | Putative nicotinate-nucleotide adenylyltransferase; Identified by match to protein family HMM PF01467. | Putative ribosome biogenesis GTPase YqeH. | 0.540 |
| EFC06021.1 | aroK | HMPREF9013_0224 | HMPREF9013_0798 | Putative nicotinate-nucleotide adenylyltransferase; Identified by match to protein family HMM PF01467. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.640 |
| EFC06089.1 | EFC06021.1 | HMPREF9013_0782 | HMPREF9013_0224 | Putative ribosome biogenesis GTPase YqeH. | Putative nicotinate-nucleotide adenylyltransferase; Identified by match to protein family HMM PF01467. | 0.540 |
| EFC06089.1 | aroK | HMPREF9013_0782 | HMPREF9013_0798 | Putative ribosome biogenesis GTPase YqeH. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.705 |
| aroA | EFC05763.1 | HMPREF9013_0796 | HMPREF9013_0687 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Aminotransferase, class I/II; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00155. | 0.725 |
| aroA | aroB | HMPREF9013_0796 | HMPREF9013_0800 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.999 |
| aroA | aroC | HMPREF9013_0796 | HMPREF9013_0799 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.999 |
| aroA | aroF | HMPREF9013_0796 | HMPREF9013_0797 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 3-deoxy-7-phosphoheptulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361. | 0.890 |
| aroA | aroK | HMPREF9013_0796 | HMPREF9013_0798 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.997 |
| aroA | aroQ | HMPREF9013_0796 | HMPREF9013_0795 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Dehydroquinase class II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.937 |
| aroB | aroA | HMPREF9013_0800 | HMPREF9013_0796 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
| aroB | aroC | HMPREF9013_0800 | HMPREF9013_0799 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.996 |
page 1 of 3