Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFC06111.1Hypothetical protein. (483 aa)    
Predicted Functional Partners:
EFC06113.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.785
EFC06112.1
ABC 3 transport family protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF02653.
       0.771
EFC06114.1
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
       0.771
EFC06309.1
Cell wall-binding repeat protein; Identified by match to protein family HMM PF01473.
    
 0.742
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
 0.734
EFC05450.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.
    
 0.641
EFC05389.1
Identified by match to protein family HMM PF01580.
  
 
 0.624
EFC06070.1
Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.624
EFC05405.1
Peptidase, C69 family; Identified by match to protein family HMM PF03577.
    
 0.568
EFC06354.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.541
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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