STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araDL-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596; match to protein family HMM TIGR00760. (229 aa)    
Predicted Functional Partners:
EFC06124.1
Putative hexulose-6-phosphate isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR00542.
 
 
 0.998
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.922
EFC06126.1
Hypothetical protein.
       0.792
adh
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; match to protein family HMM PF01761; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.789
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.758
EFC06127.1
PTS system, Lactose/Cellobiose specific IIB subunit; Identified by match to protein family HMM PF02302.
  
  
 0.752
EFC05339.1
Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
 
 0.752
EFC06128.1
Putative sugar-specific permease, SgaT/UlaA; Identified by match to protein family HMM PF04215.
  
  
 0.733
EFC06129.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359.
  
  
 0.705
EFC06130.1
Hypothetical protein.
     
 0.679
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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