STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC06127.1PTS system, Lactose/Cellobiose specific IIB subunit; Identified by match to protein family HMM PF02302. (97 aa)    
Predicted Functional Partners:
EFC06128.1
Putative sugar-specific permease, SgaT/UlaA; Identified by match to protein family HMM PF04215.
 
 
 0.999
EFC06130.1
Hypothetical protein.
 
 
 0.994
EFC06129.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359.
 
 
 0.979
EFC05488.1
PRD domain protein; Overlaps another CDS with the same product name.
  
 
 0.948
EFC06124.1
Putative hexulose-6-phosphate isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR00542.
 
  
 0.936
EFC05489.1
PRD domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05043.
  
 
 0.933
ptsH
Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
    
  0.909
EFC06126.1
Hypothetical protein.
 
     0.858
araD
L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596; match to protein family HMM TIGR00760.
  
  
 0.752
EFC06131.1
Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.
     
 0.580
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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