Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05379.1 | EFC06158.1 | HMPREF9013_0313 | HMPREF9013_0859 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.752 |
| EFC06123.1 | EFC06158.1 | HMPREF9013_0818 | HMPREF9013_0859 | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.607 |
| EFC06123.1 | EFC06160.1 | HMPREF9013_0818 | HMPREF9013_0861 | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. | Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106. | 0.694 |
| EFC06123.1 | parE | HMPREF9013_0818 | HMPREF9013_0784 | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. | DNA topoisomerase IV, B subunit; Identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01058. | 0.713 |
| EFC06123.1 | polA | HMPREF9013_0818 | HMPREF9013_0713 | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.998 |
| EFC06158.1 | EFC05379.1 | HMPREF9013_0859 | HMPREF9013_0313 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.752 |
| EFC06158.1 | EFC06123.1 | HMPREF9013_0859 | HMPREF9013_0818 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. | 0.607 |
| EFC06158.1 | EFC06159.1 | HMPREF9013_0859 | HMPREF9013_0860 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; Identified by glimmer; putative. | 0.570 |
| EFC06158.1 | EFC06160.1 | HMPREF9013_0859 | HMPREF9013_0861 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106. | 0.637 |
| EFC06158.1 | EFC06354.1 | HMPREF9013_0859 | HMPREF9013_1062 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; Identified by glimmer; putative. | 0.672 |
| EFC06158.1 | efp-2 | HMPREF9013_0859 | HMPREF9013_0862 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.578 |
| EFC06158.1 | guaA | HMPREF9013_0859 | HMPREF9013_1351 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.832 |
| EFC06158.1 | parE | HMPREF9013_0859 | HMPREF9013_0784 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | DNA topoisomerase IV, B subunit; Identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01058. | 0.539 |
| EFC06158.1 | polA | HMPREF9013_0859 | HMPREF9013_0713 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.682 |
| EFC06158.1 | scpA | HMPREF9013_0859 | HMPREF9013_0445 | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.829 |
| EFC06159.1 | EFC06158.1 | HMPREF9013_0860 | HMPREF9013_0859 | Hypothetical protein; Identified by glimmer; putative. | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.570 |
| EFC06159.1 | EFC06160.1 | HMPREF9013_0860 | HMPREF9013_0861 | Hypothetical protein; Identified by glimmer; putative. | Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106. | 0.773 |
| EFC06159.1 | efp-2 | HMPREF9013_0860 | HMPREF9013_0862 | Hypothetical protein; Identified by glimmer; putative. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.773 |
| EFC06160.1 | EFC06123.1 | HMPREF9013_0861 | HMPREF9013_0818 | Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106. | HRDC domain protein; Identified by match to protein family HMM PF00570; match to protein family HMM PF08378. | 0.694 |
| EFC06160.1 | EFC06158.1 | HMPREF9013_0861 | HMPREF9013_0859 | Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106. | M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.637 |
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