Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05700.1 | EFC06017.1 | HMPREF9013_0614 | HMPREF9013_0220 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08974. | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | 0.501 |
| EFC05700.1 | EFC06191.1 | HMPREF9013_0614 | HMPREF9013_0893 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08974. | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | 0.459 |
| EFC06017.1 | EFC05700.1 | HMPREF9013_0220 | HMPREF9013_0614 | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08974. | 0.501 |
| EFC06017.1 | EFC06191.1 | HMPREF9013_0220 | HMPREF9013_0893 | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | 0.415 |
| EFC06017.1 | pncB | HMPREF9013_0220 | HMPREF9013_0223 | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.505 |
| EFC06186.1 | EFC06191.1 | HMPREF9013_0888 | HMPREF9013_0893 | Peptidase, M23 family; Identified by match to protein family HMM PF01551; match to protein family HMM PF07501. | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | 0.538 |
| EFC06186.1 | ddl | HMPREF9013_0888 | HMPREF9013_0162 | Peptidase, M23 family; Identified by match to protein family HMM PF01551; match to protein family HMM PF07501. | D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.434 |
| EFC06186.1 | murF | HMPREF9013_0888 | HMPREF9013_0084 | Peptidase, M23 family; Identified by match to protein family HMM PF01551; match to protein family HMM PF07501. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245. | 0.474 |
| EFC06191.1 | EFC05700.1 | HMPREF9013_0893 | HMPREF9013_0614 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08974. | 0.459 |
| EFC06191.1 | EFC06017.1 | HMPREF9013_0893 | HMPREF9013_0220 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | 0.415 |
| EFC06191.1 | EFC06186.1 | HMPREF9013_0893 | HMPREF9013_0888 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | Peptidase, M23 family; Identified by match to protein family HMM PF01551; match to protein family HMM PF07501. | 0.538 |
| EFC06191.1 | EFC06192.1 | HMPREF9013_0893 | HMPREF9013_0894 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | Aluminum resistance protein; Identified by match to protein family HMM PF06838. | 0.556 |
| EFC06191.1 | EFC06288.1 | HMPREF9013_0893 | HMPREF9013_0994 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | Hypothetical protein; Identified by glimmer; putative. | 0.491 |
| EFC06191.1 | ddl | HMPREF9013_0893 | HMPREF9013_0162 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.464 |
| EFC06191.1 | mraY | HMPREF9013_0893 | HMPREF9013_0595 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.473 |
| EFC06191.1 | murF | HMPREF9013_0893 | HMPREF9013_0084 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245. | 0.462 |
| EFC06191.1 | pncB | HMPREF9013_0893 | HMPREF9013_0223 | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.480 |
| EFC06192.1 | EFC06191.1 | HMPREF9013_0894 | HMPREF9013_0893 | Aluminum resistance protein; Identified by match to protein family HMM PF06838. | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | 0.556 |
| EFC06192.1 | ddl | HMPREF9013_0894 | HMPREF9013_0162 | Aluminum resistance protein; Identified by match to protein family HMM PF06838. | D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.696 |
| EFC06288.1 | EFC06191.1 | HMPREF9013_0994 | HMPREF9013_0893 | Hypothetical protein; Identified by glimmer; putative. | Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587. | 0.491 |
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