Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05729.1 | EFC05904.1 | HMPREF9013_0652 | HMPREF9013_0103 | Hypothetical protein; Identified by glimmer; putative. | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.700 |
| EFC05729.1 | EFC06274.1 | HMPREF9013_0652 | HMPREF9013_0979 | Hypothetical protein; Identified by glimmer; putative. | Threonine/alanine tRNA ligase second additional domain protein; Identified by match to protein family HMM PF07973. | 0.945 |
| EFC05729.1 | alaS | HMPREF9013_0652 | HMPREF9013_0361 | Hypothetical protein; Identified by glimmer; putative. | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.945 |
| EFC05740.1 | EFC06274.1 | HMPREF9013_0663 | HMPREF9013_0979 | Ferredoxin-fold anticodon binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03147. | Threonine/alanine tRNA ligase second additional domain protein; Identified by match to protein family HMM PF07973. | 0.734 |
| EFC05740.1 | alaS | HMPREF9013_0663 | HMPREF9013_0361 | Ferredoxin-fold anticodon binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03147. | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.734 |
| EFC05740.1 | ileS | HMPREF9013_0663 | HMPREF9013_0020 | Ferredoxin-fold anticodon binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03147. | isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.936 |
| EFC05740.1 | metG | HMPREF9013_0663 | HMPREF9013_1148 | Ferredoxin-fold anticodon binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03147. | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.973 |
| EFC05740.1 | pheT | HMPREF9013_0663 | HMPREF9013_0664 | Ferredoxin-fold anticodon binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03147. | phenylalanine--tRNA ligase, beta subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.981 |
| EFC05740.1 | secD | HMPREF9013_0663 | HMPREF9013_0593 | Ferredoxin-fold anticodon binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03147. | Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.929 |
| EFC05803.1 | EFC05904.1 | HMPREF9013_0728 | HMPREF9013_0103 | Hypothetical protein; Identified by glimmer; putative. | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.700 |
| EFC05803.1 | EFC06274.1 | HMPREF9013_0728 | HMPREF9013_0979 | Hypothetical protein; Identified by glimmer; putative. | Threonine/alanine tRNA ligase second additional domain protein; Identified by match to protein family HMM PF07973. | 0.945 |
| EFC05803.1 | alaS | HMPREF9013_0728 | HMPREF9013_0361 | Hypothetical protein; Identified by glimmer; putative. | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.945 |
| EFC05904.1 | EFC05729.1 | HMPREF9013_0103 | HMPREF9013_0652 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Hypothetical protein; Identified by glimmer; putative. | 0.700 |
| EFC05904.1 | EFC05803.1 | HMPREF9013_0103 | HMPREF9013_0728 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Hypothetical protein; Identified by glimmer; putative. | 0.700 |
| EFC05904.1 | EFC05905.1 | HMPREF9013_0103 | HMPREF9013_0104 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Hypothetical protein; Identified by glimmer; putative. | 0.851 |
| EFC05904.1 | EFC06274.1 | HMPREF9013_0103 | HMPREF9013_0979 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Threonine/alanine tRNA ligase second additional domain protein; Identified by match to protein family HMM PF07973. | 0.801 |
| EFC05904.1 | alaS | HMPREF9013_0103 | HMPREF9013_0361 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.801 |
| EFC05904.1 | secD | HMPREF9013_0103 | HMPREF9013_0593 | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.956 |
| EFC05905.1 | EFC05904.1 | HMPREF9013_0104 | HMPREF9013_0103 | Hypothetical protein; Identified by glimmer; putative. | Trypsin; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.851 |
| EFC05905.1 | EFC06274.1 | HMPREF9013_0104 | HMPREF9013_0979 | Hypothetical protein; Identified by glimmer; putative. | Threonine/alanine tRNA ligase second additional domain protein; Identified by match to protein family HMM PF07973. | 0.945 |
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