Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05250.1 | EFC06286.1 | HMPREF9013_0534 | HMPREF9013_0993 | Kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | 0.798 |
| EFC05250.1 | pbpB | HMPREF9013_0534 | HMPREF9013_0596 | Kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793. | Penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.791 |
| EFC05250.1 | topA | HMPREF9013_0534 | HMPREF9013_0741 | Kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.441 |
| EFC05630.1 | EFC06286.1 | HMPREF9013_1335 | HMPREF9013_0993 | Listeria/Bacterioides repeat protein. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | 0.610 |
| EFC06017.1 | EFC06286.1 | HMPREF9013_0220 | HMPREF9013_0993 | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | 0.610 |
| EFC06111.1 | EFC06286.1 | HMPREF9013_0806 | HMPREF9013_0993 | Hypothetical protein. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | 0.610 |
| EFC06285.1 | EFC06286.1 | HMPREF9013_0992 | HMPREF9013_0993 | Hypothetical protein. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | 0.688 |
| EFC06286.1 | EFC05250.1 | HMPREF9013_0993 | HMPREF9013_0534 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | Kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793. | 0.798 |
| EFC06286.1 | EFC05630.1 | HMPREF9013_0993 | HMPREF9013_1335 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | Listeria/Bacterioides repeat protein. | 0.610 |
| EFC06286.1 | EFC06017.1 | HMPREF9013_0993 | HMPREF9013_0220 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein. | 0.610 |
| EFC06286.1 | EFC06111.1 | HMPREF9013_0993 | HMPREF9013_0806 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | Hypothetical protein. | 0.610 |
| EFC06286.1 | EFC06285.1 | HMPREF9013_0993 | HMPREF9013_0992 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | Hypothetical protein. | 0.688 |
| EFC06286.1 | pbpB | HMPREF9013_0993 | HMPREF9013_0596 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | Penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.510 |
| EFC06286.1 | rpoA | HMPREF9013_0993 | HMPREF9013_0903 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.829 |
| EFC06286.1 | rpoB | HMPREF9013_0993 | HMPREF9013_1185 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.859 |
| EFC06286.1 | rpoC | HMPREF9013_0993 | HMPREF9013_1186 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.868 |
| EFC06286.1 | topA | HMPREF9013_0993 | HMPREF9013_0741 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.671 |
| pbpB | EFC05250.1 | HMPREF9013_0596 | HMPREF9013_0534 | Penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Kinase domain protein; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793. | 0.791 |
| pbpB | EFC06286.1 | HMPREF9013_0596 | HMPREF9013_0993 | Penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937. | 0.510 |
| pbpB | topA | HMPREF9013_0596 | HMPREF9013_0741 | Penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.565 |
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