STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC06288.1Hypothetical protein; Identified by glimmer; putative. (249 aa)    
Predicted Functional Partners:
EFC06289.1
Hypothetical protein.
 
  
 0.981
EFC06290.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
  
 0.973
EFC06291.1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.557
EFC06292.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
       0.557
EFC06191.1
Bacterial capsule synthesis protein; Identified by match to protein family HMM PF09587.
 
     0.491
EFC05461.1
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF01381.
  
     0.486
EFC06516.1
CHAP domain protein; Identified by match to protein family HMM PF05257.
  
     0.484
EFC06347.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.
 
     0.477
EFC06294.1
Hypothetical protein.
  
    0.462
EFC05901.1
Hypothetical protein; Belongs to the SEDS family.
  
 
   0.439
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.