STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC06300.1Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF07883. (386 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 0.924
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.781
EFC06234.1
Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF08013.
  
     0.646
EFC06298.1
PTS system sorbose-specific iic component; Identified by match to protein family HMM PF03609.
 
     0.617
EFC06299.1
PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03830; match to protein family HMM TIGR00854.
 
   
 0.602
EFC05899.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
     0.596
EFC06302.1
Sugar isomerase, AgaS family; Identified by match to protein family HMM PF01380.
 
    0.575
EFC06297.1
PTS system mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.
 
     0.529
EFC06094.1
Histidine kinase; Identified by match to protein family HMM PF06580.
 
  
 0.473
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.473
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.