Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFC06300.1Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF07883. (386 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 0.922
EFC06234.1
Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF08013.
  
     0.646
EFC06298.1
PTS system sorbose-specific iic component; Identified by match to protein family HMM PF03609.
 
     0.615
EFC05899.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
     0.594
EFC06299.1
PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03830; match to protein family HMM TIGR00854.
 
     0.589
EFC06302.1
Sugar isomerase, AgaS family; Identified by match to protein family HMM PF01380.
 
    0.574
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.571
EFC06094.1
Histidine kinase; Identified by match to protein family HMM PF06580.
 
  
  0.560
EFC06093.1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
  
  0.534
EFC06297.1
PTS system mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.
 
     0.526
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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