STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC06302.1Sugar isomerase, AgaS family; Identified by match to protein family HMM PF01380. (391 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221.
 
 
 0.886
EFC06301.1
PTS system fructose IIA component; Identified by match to protein family HMM PF03610.
 
  
 0.878
EFC06234.1
Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF08013.
 
  
 0.846
EFC06298.1
PTS system sorbose-specific iic component; Identified by match to protein family HMM PF03609.
 
  
 0.834
fba
Fructose-1,6-bisphosphate aldolase, class II; Identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859.
  
 
 0.662
EFC06297.1
PTS system mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.
 
  
 0.644
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
  
 
 0.637
EFC06237.1
Hypothetical protein.
  
 
 0.623
EFC05519.1
Hypothetical protein.
  
 
 0.623
EFC05579.1
Hexose kinase, 1-phosphofructokinase family; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
    
 0.603
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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