STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC06354.1Hypothetical protein; Identified by glimmer; putative. (285 aa)    
Predicted Functional Partners:
EFC06353.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.
       0.757
EFC06352.1
Hypothetical protein; Identified by glimmer; putative.
       0.746
EFC06351.1
Hypothetical protein; Identified by glimmer; putative.
       0.730
EFC05589.1
Conserved hypothetical protein TIGR03982.
  
 
 0.712
EFC05218.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 
 0.683
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.672
EFC06158.1
M protein repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
 
 0.672
EFC05364.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.646
EFC06465.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.640
EFC06355.1
Hypothetical protein.
       0.572
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.