STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05503.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
EFC05504.1
Hypothetical protein.
       0.773
EFC05502.1
Caspase domain protein; Identified by match to protein family HMM PF00656.
       0.750
EFC05501.1
Hypothetical protein.
       0.739
EFC05505.1
Single-strand binding family protein.
       0.484
EFC05506.1
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF02384.
       0.411
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.