STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05517.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
EFC05541.1
Hypothetical protein.
     0.978
EFC05548.1
TraG family protein.
 
     0.976
EFC05513.1
Hypothetical protein.
 
  
 0.845
EFC05515.1
Hypothetical protein.
 
     0.842
EFC05506.1
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF02384.
 
    0.663
EFC05961.1
Phospholipase, patatin family; Identified by match to protein family HMM PF01734.
    
   0.647
EFC05518.1
Hypothetical protein.
       0.529
EFC05516.1
Hypothetical protein.
       0.493
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.