STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05626.1Hypothetical protein. (312 aa)    
Predicted Functional Partners:
EFC05625.1
Identified by match to protein family HMM PF02492.
 
     0.956
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.761
EFC05627.1
Identified by match to protein family HMM PF06912.
 
     0.685
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.641
EFC05789.1
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297.
 
  
 0.567
EFC05866.1
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297.
 
  
 0.560
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.560
EFC06074.1
Identified by match to protein family HMM PF01569.
  
     0.529
EFC06114.1
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.501
EFC06255.1
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.501
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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