Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05321.1 | EFC05322.1 | HMPREF9013_1345 | HMPREF9013_1346 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | 0.993 |
| EFC05321.1 | EFC05323.1 | HMPREF9013_1345 | HMPREF9013_1347 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Hypothetical protein. | 0.804 |
| EFC05321.1 | EFC05481.1 | HMPREF9013_1345 | HMPREF9013_1477 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | 0.986 |
| EFC05321.1 | EFC05483.1 | HMPREF9013_1345 | HMPREF9013_1471 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Type I restriction-modification system, S subunit family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative. | 0.872 |
| EFC05321.1 | EFC05506.1 | HMPREF9013_1345 | HMPREF9013_1209 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF02384. | 0.885 |
| EFC05321.1 | EFC05507.1 | HMPREF9013_1345 | HMPREF9013_1210 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Divergent AAA domain protein; Identified by match to protein family HMM PF04326. | 0.745 |
| EFC05321.1 | EFC05632.1 | HMPREF9013_1345 | HMPREF9013_1337 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Hypothetical protein. | 0.904 |
| EFC05321.1 | atpF | HMPREF9013_1345 | HMPREF9013_1131 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | ATP synthase B/B' CF(0); Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.890 |
| EFC05321.1 | hsdR | HMPREF9013_1345 | HMPREF9013_1343 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. | 0.985 |
| EFC05321.1 | polA | HMPREF9013_1345 | HMPREF9013_0713 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.723 |
| EFC05322.1 | EFC05321.1 | HMPREF9013_1346 | HMPREF9013_1345 | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | 0.993 |
| EFC05322.1 | EFC05323.1 | HMPREF9013_1346 | HMPREF9013_1347 | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | Hypothetical protein. | 0.786 |
| EFC05322.1 | EFC05481.1 | HMPREF9013_1346 | HMPREF9013_1477 | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | 0.969 |
| EFC05322.1 | EFC05483.1 | HMPREF9013_1346 | HMPREF9013_1471 | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | Type I restriction-modification system, S subunit family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative. | 0.966 |
| EFC05322.1 | EFC05632.1 | HMPREF9013_1346 | HMPREF9013_1337 | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | Hypothetical protein. | 0.528 |
| EFC05322.1 | hsdR | HMPREF9013_1346 | HMPREF9013_1343 | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. | 0.985 |
| EFC05323.1 | EFC05321.1 | HMPREF9013_1347 | HMPREF9013_1345 | Hypothetical protein. | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | 0.804 |
| EFC05323.1 | EFC05322.1 | HMPREF9013_1347 | HMPREF9013_1346 | Hypothetical protein. | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | 0.786 |
| EFC05481.1 | EFC05321.1 | HMPREF9013_1477 | HMPREF9013_1345 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | 0.986 |
| EFC05481.1 | EFC05322.1 | HMPREF9013_1477 | HMPREF9013_1346 | Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01420. | Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. | 0.969 |
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