STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05349.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (569 aa)    
Predicted Functional Partners:
EFC05348.1
ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.
 
 
 
0.873
EFC06028.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     
0.856
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
    
0.790
EFC06293.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; Identified by match to protein family HMM PF00005.
    
0.766
EFC05350.1
FMN-binding domain protein; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF04205; match to protein family HMM PF07992.
  
    0.464
EFC06197.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
 
0.462
EFC06451.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
 
0.462
EFC05170.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 
0.461
EFC05532.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 
0.454
EFC06024.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 
0.453
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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