STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05362.1Helicase C-terminal domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00271. (373 aa)    
Predicted Functional Partners:
EFC05361.1
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.952
EFC05199.1
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
   
  
 0.816
EFC05197.1
Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.758
EFC05432.1
comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.
   
  
 0.739
spxA
Transcriptional regulator Spx; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family.
  
     0.636
EFC05198.1
Hypothetical protein; Identified by glimmer; putative.
   
  
 0.632
EFC05363.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
       0.625
EFC05884.1
Identified by match to protein family HMM PF07949.
  
     0.608
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
       0.589
EFC05316.1
Hypothetical protein.
  
     0.559
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.