Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC06479.1 | EFC06480.1 | HMPREF9013_1425 | HMPREF9013_1426 | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | 0.625 |
| EFC06479.1 | EFC06481.1 | HMPREF9013_1425 | HMPREF9013_1427 | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.625 |
| EFC06479.1 | EFC06483.1 | HMPREF9013_1425 | HMPREF9013_1429 | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family. | 0.626 |
| EFC06479.1 | EFC06484.1 | HMPREF9013_1425 | HMPREF9013_1430 | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Hypothetical protein; Identified by glimmer; putative. | 0.625 |
| EFC06479.1 | EFC06485.1 | HMPREF9013_1425 | HMPREF9013_1431 | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Hypothetical protein. | 0.414 |
| EFC06479.1 | hslO | HMPREF9013_1425 | HMPREF9013_1428 | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress. | 0.625 |
| EFC06479.1 | nifJ | HMPREF9013_1425 | HMPREF9013_0578 | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.435 |
| EFC06480.1 | EFC06479.1 | HMPREF9013_1426 | HMPREF9013_1425 | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | 0.625 |
| EFC06480.1 | EFC06481.1 | HMPREF9013_1426 | HMPREF9013_1427 | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.994 |
| EFC06480.1 | EFC06483.1 | HMPREF9013_1426 | HMPREF9013_1429 | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family. | 0.778 |
| EFC06480.1 | EFC06484.1 | HMPREF9013_1426 | HMPREF9013_1430 | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| EFC06480.1 | EFC06485.1 | HMPREF9013_1426 | HMPREF9013_1431 | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | Hypothetical protein. | 0.498 |
| EFC06480.1 | hslO | HMPREF9013_1426 | HMPREF9013_1428 | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress. | 0.819 |
| EFC06481.1 | EFC06479.1 | HMPREF9013_1427 | HMPREF9013_1425 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | 0.625 |
| EFC06481.1 | EFC06480.1 | HMPREF9013_1427 | HMPREF9013_1426 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | TIM-barrel protein, nifR3 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01207. | 0.994 |
| EFC06481.1 | EFC06483.1 | HMPREF9013_1427 | HMPREF9013_1429 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family. | 0.778 |
| EFC06481.1 | EFC06484.1 | HMPREF9013_1427 | HMPREF9013_1430 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| EFC06481.1 | EFC06485.1 | HMPREF9013_1427 | HMPREF9013_1431 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein. | 0.498 |
| EFC06481.1 | hslO | HMPREF9013_1427 | HMPREF9013_1428 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress. | 0.819 |
| EFC06483.1 | EFC06479.1 | HMPREF9013_1429 | HMPREF9013_1425 | Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family. | Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | 0.626 |
page 1 of 3