node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplQ | rplT | HMPREF9336_00044 | HMPREF9336_01153 | 50S ribosomal protein L17. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rplQ | rplV | HMPREF9336_00044 | HMPREF9336_01520 | 50S ribosomal protein L17. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplQ | rpmE | HMPREF9336_00044 | HMPREF9336_00355 | 50S ribosomal protein L17. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.999 |
rplQ | rpmF | HMPREF9336_00044 | HMPREF9336_00958 | 50S ribosomal protein L17. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rplQ | rpmI | HMPREF9336_00044 | HMPREF9336_01152 | 50S ribosomal protein L17. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
rplQ | rpmJ | HMPREF9336_00044 | HMPREF9336_00039 | 50S ribosomal protein L17. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
rplQ | rpsD | HMPREF9336_00044 | HMPREF9336_00042 | 50S ribosomal protein L17. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplQ | rpsK | HMPREF9336_00044 | HMPREF9336_00041 | 50S ribosomal protein L17. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplQ | rpsM | HMPREF9336_00044 | HMPREF9336_00040 | 50S ribosomal protein L17. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplQ | rpsR | HMPREF9336_00044 | HMPREF9336_00953 | 50S ribosomal protein L17. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rplT | rplQ | HMPREF9336_01153 | HMPREF9336_00044 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 50S ribosomal protein L17. | 0.999 |
rplT | rplV | HMPREF9336_01153 | HMPREF9336_01520 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplT | rpmE | HMPREF9336_01153 | HMPREF9336_00355 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.999 |
rplT | rpmF | HMPREF9336_01153 | HMPREF9336_00958 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rplT | rpmI | HMPREF9336_01153 | HMPREF9336_01152 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
rplT | rpmJ | HMPREF9336_01153 | HMPREF9336_00039 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
rplT | rpsD | HMPREF9336_01153 | HMPREF9336_00042 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplT | rpsK | HMPREF9336_01153 | HMPREF9336_00041 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplT | rpsM | HMPREF9336_01153 | HMPREF9336_00040 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplT | rpsR | HMPREF9336_01153 | HMPREF9336_00953 | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |