Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFV15119.1 | EFV15121.1 | HMPREF9336_00026 | HMPREF9336_00028 | Hypothetical protein. | Hypothetical protein. | 0.948 |
EFV15119.1 | ERG69096.1 | HMPREF9336_00026 | HMPREF9336_04240 | Hypothetical protein. | Hypothetical protein. | 0.948 |
EFV15121.1 | EFV15119.1 | HMPREF9336_00028 | HMPREF9336_00026 | Hypothetical protein. | Hypothetical protein. | 0.948 |
EFV15121.1 | ERG69096.1 | HMPREF9336_00028 | HMPREF9336_04240 | Hypothetical protein. | Hypothetical protein. | 0.948 |
ERG69096.1 | EFV15119.1 | HMPREF9336_04240 | HMPREF9336_00026 | Hypothetical protein. | Hypothetical protein. | 0.948 |
ERG69096.1 | EFV15121.1 | HMPREF9336_04240 | HMPREF9336_00028 | Hypothetical protein. | Hypothetical protein. | 0.948 |
ERG69096.1 | rplB | HMPREF9336_04240 | HMPREF9336_01518 | Hypothetical protein. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.898 |
ERG69096.1 | rplD | HMPREF9336_04240 | HMPREF9336_01516 | Hypothetical protein. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.883 |
ERG69096.1 | rplO | HMPREF9336_04240 | HMPREF9336_03238 | Hypothetical protein. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.893 |
ERG69096.1 | rplP | HMPREF9336_04240 | HMPREF9336_01522 | Hypothetical protein. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.892 |
ERG69096.1 | rpsB | HMPREF9336_04240 | HMPREF9336_02981 | Hypothetical protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.891 |
ERG69096.1 | rpsC | HMPREF9336_04240 | HMPREF9336_01521 | Hypothetical protein. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.890 |
ERG69096.1 | rpsD | HMPREF9336_04240 | HMPREF9336_00042 | Hypothetical protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.886 |
ERG69096.1 | rpsK | HMPREF9336_04240 | HMPREF9336_00041 | Hypothetical protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.885 |
rplB | ERG69096.1 | HMPREF9336_01518 | HMPREF9336_04240 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Hypothetical protein. | 0.898 |
rplB | rplD | HMPREF9336_01518 | HMPREF9336_01516 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rplB | rplO | HMPREF9336_01518 | HMPREF9336_03238 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplB | rplP | HMPREF9336_01518 | HMPREF9336_01522 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplB | rpsB | HMPREF9336_01518 | HMPREF9336_02981 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplB | rpsC | HMPREF9336_01518 | HMPREF9336_01521 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
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