Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHG21228.1 | EHG25093.1 | HMPREF9332_01747 | HMPREF9332_00001 | Hypothetical protein. | Chaperone htpG. | 0.953 |
EHG21228.1 | clpB | HMPREF9332_01747 | HMPREF9332_00560 | Hypothetical protein. | Chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.672 |
EHG21228.1 | clpP | HMPREF9332_01747 | HMPREF9332_00137 | Hypothetical protein. | ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.487 |
EHG21228.1 | dnaK | HMPREF9332_01747 | HMPREF9332_00528 | Hypothetical protein. | Chaperone dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.994 |
EHG21228.1 | groL | HMPREF9332_01747 | HMPREF9332_01929 | Hypothetical protein. | Chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.722 |
EHG21228.1 | groS | HMPREF9332_01747 | HMPREF9332_01928 | Hypothetical protein. | Chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.584 |
EHG21228.1 | grpE | HMPREF9332_01747 | HMPREF9332_00237 | Hypothetical protein. | Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...] | 0.881 |
EHG21228.1 | lon | HMPREF9332_01747 | HMPREF9332_00254 | Hypothetical protein. | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.525 |
EHG21228.1 | msrA | HMPREF9332_01747 | HMPREF9332_00559 | Hypothetical protein. | Hypothetical protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.463 |
EHG25093.1 | EHG21228.1 | HMPREF9332_00001 | HMPREF9332_01747 | Chaperone htpG. | Hypothetical protein. | 0.953 |
EHG25093.1 | clpB | HMPREF9332_00001 | HMPREF9332_00560 | Chaperone htpG. | Chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.584 |
EHG25093.1 | clpP | HMPREF9332_00001 | HMPREF9332_00137 | Chaperone htpG. | ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.461 |
EHG25093.1 | dnaJ | HMPREF9332_00001 | HMPREF9332_00238 | Chaperone htpG. | Chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and [...] | 0.953 |
EHG25093.1 | dnaK | HMPREF9332_00001 | HMPREF9332_00528 | Chaperone htpG. | Chaperone dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.999 |
EHG25093.1 | groL | HMPREF9332_00001 | HMPREF9332_01929 | Chaperone htpG. | Chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.920 |
EHG25093.1 | groS | HMPREF9332_00001 | HMPREF9332_01928 | Chaperone htpG. | Chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.776 |
EHG25093.1 | grpE | HMPREF9332_00001 | HMPREF9332_00237 | Chaperone htpG. | Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...] | 0.693 |
EHG25093.1 | lon | HMPREF9332_00001 | HMPREF9332_00254 | Chaperone htpG. | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.657 |
clpB | EHG21228.1 | HMPREF9332_00560 | HMPREF9332_01747 | Chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | Hypothetical protein. | 0.672 |
clpB | EHG25093.1 | HMPREF9332_00560 | HMPREF9332_00001 | Chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | Chaperone htpG. | 0.584 |
page 1 of 6