STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI56463.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
EHI56462.1
Hypothetical protein.
 
  
 0.951
EHI56461.1
Hypothetical protein.
       0.785
EHI56058.1
Hypothetical protein; Belongs to the CinA family.
    
 0.669
EHI55038.1
Hypothetical protein; Belongs to the NAD synthetase family.
    
  0.617
EHI55052.1
Hypothetical protein.
  
    0.490
EHI55736.1
Hypothetical protein.
  
     0.475
EHI54960.1
Pyruvate:ferredoxin oxidoreductase.
  
 
  0.468
EHI55729.1
Pyruvate:ferredoxin oxidoreductase.
  
 
  0.460
EHI55542.1
Hypothetical protein.
  
     0.440
recA
Hypothetical protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.427
Your Current Organism:
Johnsonella ignava
NCBI taxonomy Id: 679200
Other names: J. ignava ATCC 51276, Johnsonella ignava ATCC 51276, Johnsonella ignava str. ATCC 51276, Johnsonella ignava strain ATCC 51276
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.