STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (343 aa)    
Predicted Functional Partners:
EHI55110.1
Undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.985
EHI56480.1
Hypothetical protein.
  
 
 0.937
EHI56485.1
Hypothetical protein.
 0.913
EHI55377.1
Hypothetical protein.
    
 0.892
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
 
  
   0.788
EHI55116.1
Hypothetical protein.
  
 0.755
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
 
      0.725
EHI55462.1
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.693
EHI55329.1
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.693
EHI56478.1
Hypothetical protein.
  
 
 0.649
Your Current Organism:
Johnsonella ignava
NCBI taxonomy Id: 679200
Other names: J. ignava ATCC 51276, Johnsonella ignava ATCC 51276, Johnsonella ignava str. ATCC 51276, Johnsonella ignava strain ATCC 51276
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.