STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI55307.1Cysteine desulfurase. (379 aa)    
Predicted Functional Partners:
EHI56208.1
NifU family SUF system FeS assembly protein.
 0.942
EHI55309.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
 
   0.841
EHI55308.1
Hypothetical protein.
 
     0.824
EHI56796.1
Selenide.
  
  0.779
EHI55920.1
Hypothetical protein.
    
   0.771
EHI56205.1
FeS assembly protein SufB.
 
 0.763
EHI56204.1
FeS assembly ATPase SufC.
  
 0.743
EHI56206.1
Hypothetical protein.
 
 0.727
EHI55995.1
Hypothetical protein.
 
 
   0.724
EHI54703.1
Alkyl hydroperoxide reductase F subunit.
  
 
  0.658
Your Current Organism:
Johnsonella ignava
NCBI taxonomy Id: 679200
Other names: J. ignava ATCC 51276, Johnsonella ignava ATCC 51276, Johnsonella ignava str. ATCC 51276, Johnsonella ignava strain ATCC 51276
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.