Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHG19879.1 | EHG19880.1 | HMPREF9334_01771 | HMPREF9334_01772 | Hypothetical protein. | Hypothetical protein; Belongs to the sigma-70 factor family. | 0.625 |
EHG19879.1 | EHG19883.1 | HMPREF9334_01771 | HMPREF9334_01775 | Hypothetical protein. | Hypothetical protein. | 0.841 |
EHG19880.1 | EHG19879.1 | HMPREF9334_01772 | HMPREF9334_01771 | Hypothetical protein; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.625 |
EHG19880.1 | EHG19883.1 | HMPREF9334_01772 | HMPREF9334_01775 | Hypothetical protein; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.651 |
EHG19880.1 | EHG21700.1 | HMPREF9334_01772 | HMPREF9334_00670 | Hypothetical protein; Belongs to the sigma-70 factor family. | Hypothetical protein; Belongs to the ArsC family. | 0.701 |
EHG19880.1 | dnaG | HMPREF9334_01772 | HMPREF9334_01069 | Hypothetical protein; Belongs to the sigma-70 factor family. | Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.651 |
EHG19880.1 | guaA | HMPREF9334_01772 | HMPREF9334_00361 | Hypothetical protein; Belongs to the sigma-70 factor family. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.607 |
EHG19880.1 | nusA | HMPREF9334_01772 | HMPREF9334_01990 | Hypothetical protein; Belongs to the sigma-70 factor family. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.607 |
EHG19880.1 | rpoA | HMPREF9334_01772 | HMPREF9334_01455 | Hypothetical protein; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.909 |
EHG19880.1 | rpoB | HMPREF9334_01772 | HMPREF9334_01694 | Hypothetical protein; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.920 |
EHG19880.1 | rpoC | HMPREF9334_01772 | HMPREF9334_01693 | Hypothetical protein; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.912 |
EHG19880.1 | rpoZ | HMPREF9334_01772 | HMPREF9334_01448 | Hypothetical protein; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.908 |
EHG19883.1 | EHG19879.1 | HMPREF9334_01775 | HMPREF9334_01771 | Hypothetical protein. | Hypothetical protein. | 0.841 |
EHG19883.1 | EHG19880.1 | HMPREF9334_01775 | HMPREF9334_01772 | Hypothetical protein. | Hypothetical protein; Belongs to the sigma-70 factor family. | 0.651 |
EHG21700.1 | EHG19880.1 | HMPREF9334_00670 | HMPREF9334_01772 | Hypothetical protein; Belongs to the ArsC family. | Hypothetical protein; Belongs to the sigma-70 factor family. | 0.701 |
EHG21700.1 | rpoA | HMPREF9334_00670 | HMPREF9334_01455 | Hypothetical protein; Belongs to the ArsC family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.917 |
EHG21700.1 | rpoB | HMPREF9334_00670 | HMPREF9334_01694 | Hypothetical protein; Belongs to the ArsC family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.755 |
EHG21700.1 | rpoC | HMPREF9334_00670 | HMPREF9334_01693 | Hypothetical protein; Belongs to the ArsC family. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.911 |
EHG21700.1 | rpoZ | HMPREF9334_00670 | HMPREF9334_01448 | Hypothetical protein; Belongs to the ArsC family. | DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.775 |
dnaG | EHG19880.1 | HMPREF9334_01069 | HMPREF9334_01772 | Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Hypothetical protein; Belongs to the sigma-70 factor family. | 0.651 |
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