STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU00920HIT-family protein; evidence=ISS; db_xref=cjejuni:Cj0898; date=20070321; method=automatic:reciprocal fasta. (110 aa)    
Predicted Functional Partners:
rpoC
Putative DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.905
HMU00910
Putative aminotransferase; evidence=ISS; db_xref=cjejuni:Cj0791c; date=20070321; method=automatic:reciprocal fasta.
   
   0.824
HMU00940
Putative periplasmic protein; evidence=ISS.
       0.805
fcl
Putative GDP-L-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
   
   0.782
bioB
Putative biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
       0.768
wlaB
ABC-type transport protein; evidence=ISS; db_xref=cjejuni:Cj1130c; date=20070321; method=automatic:reciprocal fasta.
       0.762
rpsA
30S ribosomal protein S1; evidence=ISS; db_xref=cjejuni:Cj0893c; date=20070321; method=automatic:reciprocal fasta.
       0.669
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.