Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HMU02450Putative lipoprotein; evidence=ISS; db_xref=cjejuni:Cj0457c; date=20070321; method=automatic:reciprocal fasta. (212 aa)    
Predicted Functional Partners:
HMU02550
Putative lipid A biosynthesis acyltransferase; evidence=ISS.
 
  
  0.958
HMU02440
Putative tRNA modification enzyme MiaB; evidence=ISS; db_xref=cjejuni:Cj0458c; date=20070321; method=automatic:reciprocal fasta.
       0.814
HMU02460
Putative hypothetical protein; evidence=ISS.
       0.706
HMU02470
Putative membrane protein; evidence=ISS.
       0.706
HMU02430
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0459c; date=20070321; method=automatic:reciprocal fasta.
       0.651
HMU02480
Putative membrane protein; evidence=ISS.
       0.561
HMU02510
Putative ATP dependent nuclease AddB; evidence=ISS; db_xref=cjejuni:Cj0497; date=20070321; method=automatic:top fasta hit.
 
     0.532
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
     0.479
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).
       0.468
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.459
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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