STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU02490Putative outer membrane protein; evidence=ISS. (469 aa)    
Predicted Functional Partners:
HMU02500
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0496; date=20070321; method=automatic:reciprocal fasta.
       0.762
HMU02510
Putative ATP dependent nuclease AddB; evidence=ISS; db_xref=cjejuni:Cj0497; date=20070321; method=automatic:top fasta hit.
       0.762
fdxB
Putative ferredoxin; evidence=ISS; db_xref=cjejuni:Cj0354c; date=20070321; method=automatic:reciprocal fasta.
       0.554
HMU02530
Putative Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GppA; evidence=ISS; db_xref=cjejuni:Cj0353c; date=20070321; method=automatic:reciprocal fasta.
       0.550
waaC
Putative lipopolysaccharide heptosyltransferase; evidence=ISS; db_xref=cjejuni:Cj1133; date=20070321; method=automatic:reciprocal fasta.
       0.550
HMU02550
Putative lipid A biosynthesis acyltransferase; evidence=ISS.
       0.550
HMU02560
Putative membrane protein; evidence=ISS.
       0.550
ktrB
Putative K+ uptake protein; evidence=ISS; db_xref=cjejuni:Cj1283; date=20070321; method=automatic:reciprocal fasta.
       0.550
ktrA
Putative K+ uptake protein; evidence=ISS; db_xref=cjejuni:Cj1284; date=20070321; method=automatic:reciprocal fasta.
       0.536
HMU02480
Putative membrane protein; evidence=ISS.
       0.412
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.