STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdxAFerredoxin; evidence=ISS; db_xref=cjejuni:Cj0333c; date=20070321; method=automatic:reciprocal fasta. (92 aa)    
Predicted Functional Partners:
frdA
Fumarate reductase flavoprotein subunit; evidence=ISS; db_xref=cjejuni:Cj0409; date=20070321; method=automatic:reciprocal fasta.
  
 
 0.848
napD
Putative Periplasmic nitrate reductase component, NapD; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
  
  
 0.601
hydB
Ni/Fe-hydrogenase large subunit; evidence=ISS; db_xref=cjejuni:Cj1266c; date=20070321; method=automatic:reciprocal fasta; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
   
  
 0.563
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.538
frdC
Fumarate reductase cytochrome B subunit; evidence=ISS; db_xref=cjejuni:Cj0408; date=20070321; method=automatic:reciprocal fasta.
   
  
 0.512
napG
Putative NapG ferredoxin-type protein; evidence=ISS; db_xref=cjejuni:Cj0781; date=20070321; method=automatic:reciprocal fasta.
  
  
 0.504
hydA2
Putative Ni/Fe-hydrogenase small subunit; evidence=ISS; db_xref=cjejuni:Cj1399c; date=20070321; method=automatic:reciprocal fasta.
   
    0.469
hydA
Ni/Fe-hydrogenase small chain; evidence=ISS; db_xref=cjejuni:Cj1267c; date=20070321; method=automatic:reciprocal fasta.
   
    0.469
HMU11070
nifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.428
mutY
A/G-specific adenine glycosylase; evidence=ISS; db_xref=cjejuni:Cj1620c; date=20070321; method=automatic:reciprocal fasta.
      
 0.412
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.