Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
perRPeroxide stress regulator; evidence=ISS; db_xref=cjejuni:Cj0322; date=20070321; method=automatic:reciprocal fasta; Belongs to the Fur family. (137 aa)    
Predicted Functional Partners:
rpoC
Putative DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.891
ahpC
Alkyl hydroperoxide reductase; evidence=ISS; db_xref=cjejuni:Cj0334; date=20070321; method=automatic:reciprocal fasta.
  
  
 0.884
fur
Ferric uptake regulator; evidence=ISS; db_xref=cjejuni:Cj0400; date=20070321; method=automatic:reciprocal fasta; Belongs to the Fur family.
  
     0.701
ffh
Signal recognition particle protein; evidence=ISS; db_xref=cjejuni:Cj0709; date=20070321; method=automatic:reciprocal fasta; KH; Identifies lots of SRP homologues with blastp on pubmed, closest is Wolinella succinogenes DSM 1740 Score = 602 bits (1552), Expect = 9e-171 Identities = 292/439 (66%), Positives = 382/439 (87%), Gaps = 0/439 (0%No other homologues in mustalae.
  
  
 0.688
sodB
Superoxide dismutase (Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.668
feoB
Ferrous iron transport protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
     
 0.661
crdS
Putative two-component regulation system CdrRS, sensor component CrdS; 15968080; ; evidence=ISS; db_xref=cjejuni:Cj1222c; date=20070321; method=automatic:top fasta hit.
      
 0.631
CopP
Putative heavy-metal-associated protein; evidence=ISS; db_xref=saureusMSSA476:SAS2444; date=20070321; method=automatic:reciprocal fasta.
     
 0.628
nikR
Nickel responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
   
  
 0.623
HMU00760
Putative disulphide isomerase; PMID: 12747845; ; evidence=ISS.
   
  
 0.621
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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