Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
HMU03490Amino-acid ABC transporter ATP-binding protein; evidence=IEA; db_xref=cjejuni:Cj0469; date=20070321; method=automatic:reciprocal fasta. (244 aa)    
Predicted Functional Partners:
HMU03470
Amino-acid ABC transporter integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0467; date=20070321; method=automatic:reciprocal fasta.
 0.999
HMU03480
Amino-acid ABC transporter integral membrane protein; evidence=IEA; db_xref=cjejuni:Cj0468; date=20070321; method=automatic:reciprocal fasta.
 
 0.999
HMU03500
Putative amino-acid transporter periplasmic solute-binding protein; evidence=IEA; db_xref=cjejuni:Cj0982c; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.949
gdh
NADP-specific glutamate dehydrogenase; evidence=ISS; db_xref=suberis:SUB0762; date=20070321; method=automatic:reciprocal fasta; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.624
argG
Argininosuccinate synthase; evidence=ISS; db_xref=cjejuni:Cj0665c; date=20070321; method=automatic:reciprocal fasta; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.508
HMU03510
Putative outer membrane protein; evidence=ISS.
       0.479
HMU03520
Putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; evidence=ISS; db_xref=cjejuni:Cj0546; date=20070321; method=automatic:reciprocal fasta; Belongs to the UbiD family.
       0.479
HMU03530
Putative hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.467
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
       0.410
HMU03440
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1463; date=20070321; method=automatic:top fasta hit.
       0.410
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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